Functional Annotation of P. Generosa transcriptome part 5

Note: I was using the wrong UpSet plot data format:: I redit this entire pipeline in the post from 03-11-22

Summary Data

tissue TotalReadsN mean tpm Q4 tpm
ctenidia 455026 90.4 21.8
gonad 251600 190.0 69.8
heart 424126 193.0 22.1
juv_amb 708616 165.0 24.1
juv_sl 712018 181.0 29
larvae 495025 107.0 25.1

Count Data (total unique genes per tissue type)

heart gonad ctenidia juv_amb juv_sl larvae size
      x     194084
        x   189123
          x 123806
x           113179
    x       111266
  x         64841
      x x   28083
      x   x 18172

Set Size (for UpSet plot)–note not the same as the count matrix aboove (~50% data not accounted for)

tissue size
heart 196832
gonad 111716
ctenidia 196188
juv_amb 318959
juv_sl 311908
larvae 216016

UpSet Plots

all intersections

plot with all intersections

two or less intersections

plot with two or less intersections

three or more intersections

plot with three or more intersections

Written on March 1, 2022