2021 May 12th RNA seq results analysis

library(credentials) set_github_pat()

curl --insecure \
-O https://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_transcriptome_v5.fasta

pwd
mv ../Pgenerosa_transcriptome_v5.fasta ../data/Pgenerosa_transcriptome_v5.fasta

cd ../data
curl --insecure \
-O https://owl.fish.washington.edu/nightingales/P_generosa/Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001.fastq.gz
curl --insecure \
-O https://owl.fish.washington.edu/nightingales/P_generosa/Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R2_001.fastq.gz
cd ../code